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Molecular Medicine Laboratory, Institute of Comparative Medicine, University of Glasgow Veterinary School, G61 1QH, Scotland, UK;
* Division of Farm Animal Science, University of Bristol Veterinary School, Langford, Bristol, BS40 5DU, UK; and
Sygen International plc, Department of Pathology, University of Cambridge, Cambridge, CB2 1QP, UK
2To whom correspondence should be addressed. E-mail: nadc1a{at}udcf.gla.ac.uk.
| ABSTRACT |
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KEY WORDS: dietary restriction protein restriction microarray skeletal muscle porcine
Dietary restriction, in particular energy restriction (ER),3 has been extensively shown to reduce the degenerative effects of aging and to extend life expectancy in laboratory rodents (15). The biological effects of ER include improved antioxidant defenses (6), reduced oxidative damage (7,8), increased protein turnover, and increased fatty acid metabolism (8). The insulin/insulin-like growth factor type 1 (IGF-1) signaling axis appears to be involved, at least in part, in mediating some of the beneficial effects of dietary restriction, in particular longevity (4,911). Selective inactivation of the IGF-1/insulin receptor in vivo was recently shown to increase lifespan in mice by 1826% (12,13). By contrast, there is evidence to suggest that dietary restriction imposed during fetal development or on early newborns could have deleterious consequences in later life, such as reduced glucose tolerance, type 2 diabetes, and reduced lifespan (14,15). At present, it is not clear whether the beneficial effects of a restricted dietary regimen apply to all stages of life. Equally, the dose and compositional effects of dietary restriction remain poorly understood.
Current dietary studies have focused on elucidating the molecular mechanisms linked to the aging process, which requires the use of mature-to-old animals, primarily laboratory rodents (6,8,16). Relatively little is known about the molecular response to dietary restriction in young growing animals, even less in large animal models. In farm animals, the transient use of restricted feeding in the young to induce subsequent compensatory growth is an important husbandry tool. It is relevant to note that the tissue that exhibits the highest postnatal growth rate is skeletal muscle (17). Our understanding of the underlying molecular mechanisms responsible for compensatory growth is limited; the nature of involvement of IGF-1 and other growth factors is not clear (18,19). We applied phenotypically divergent skeletal muscles (longissimus dorsi and psoas) of young growing pigs to a purpose-built porcine skeletal muscle cDNA microarray to profile the molecular changes and gain insights into the signaling molecules that mediate the effects of dietary restriction, including candidate genes that could be involved in compensatory growth.
| MATERIALS AND METHODS |
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-linoleic acid)/g fatty acids. Pigs were fed twice daily at a level estimated to be at 90% of ad libitum intake and weighed each week. After the 12-wk fattening period, pigs were transported to the University of Bristol licensed abattoir, electrically stunned, and slaughtered by severing the blood vessels of the neck. Approximately 200 mg samples of white longissimus dorsi (LD) and red psoas major muscles were removed, frozen in dry ice, and stored at 80°C for subsequent mRNA extraction. The backfat thickness (P2) was recorded at a point 6.5 cm from the dorsal midline at the level of the last rib using an intrascope (SFK),
30 min after slaughter. Murine C2C12 myoblasts. C2C12 cells (CRL-1772) were grown in 75 cm2 flasks in proliferation medium (PM) (10% fetal bovine serum in DMEM). When the cells became 50% confluent, differentiation was initiated with the use of differentiation medium (DF) (2% horse serum in DMEM). C2C12 myoblasts/myotubes were harvested at different time points for mRNA extraction and cDNA conversion (20).
Fatty acid and insulin measurements. Lipid was extracted from LD and psoas muscles using chloroform:methanol (2:1) as previously described (21). Total lipid (marbling fat) was separated on silicic acid columns (Jones Chromatography) into neutral lipid and phospholipid. FAMEs were prepared using diazomethane and analyzed by GLC (22). Fatty acids in both fractions were quantified using 21:0 as an internal standard. Plasma insulin concentrations were determined by RIA (125I RIA kit, ICN Pharmaceuticals).
Microarray experiments. Two cohybridization experiments to assess the effects of diet on the LD and psoas muscle were conducted (C diet LD vs. LPE diet LD, and C diet psoas vs. LPE diet psoas). Four duplicate porcine microarray chips were used for each muscle experiment. Each cDNA clone, in turn, was spotted twice on each chip. Details of the design and construction of the porcine skeletal muscle cDNA microarray were previously described (23). Briefly, the microarray comprises 5500 cDNA clones, selected from 2 developmentally stage-specific porcine skeletal muscle cDNA libraries.
Unlike laboratory strains of inbred mice, pigs from the same breed are not genetically identical. To minimize differences due to genetic variability among individual pigs, each cyanine-dye (Cy-dye)labeled target was derived from pooled LD or psoas mRNA, taken from muscles of 6 individual pigs fed the C or LPE diet. Details of mRNA isolation, Cy-dye labeling by reverse transcription, hybridization, scanning, data capturing using ImaGene 4.0 (BioDiscovery), and data analysis, which included an intensity-dependent (LOWESS) normalization step using GeneSpring 6.0 (Silicon Genetics), were described previously (23). Clones not previously identified were sequenced with T7 and T3 primers using an ABI BigDye Terminator v3.0 PCR-based sequencing kit (Applied Biosystems). Performa DTR gel filtration cartridges (EDGE Biosystems) were used for purification of PCR products before loading onto the ABI PRISM 3100 Genetic Analyzer. All sequence data were subjected to BLAST (Basic Local Alignment Search Tool) searches for gene identification by sequence similarity.
Quantitative real-time RT-PCR.
TaqMan quantitative real-time RT-PCR (Applied Biosystems) was performed on selected porcine and murine genes: myosin heavy chain (MyHC) 2a, MyHC 2b, ß-actin,
-actin, phytanoyl-CoA hydroxylase,
-9 desaturase (acc. no. Z97186), cbl-b, muscle creatine kinase, a novel tumor necrosis factor (TNF) member gene (kc2725), and P311. Table 1provides details of primers and probes of genes not previously given. Sequence details of primers, TaqMan probes, and quantification protocol, based on the use of relative standard curve, were as previously described (23,24). Four pools of cDNA samples were used as templates (C diet LD vs. LPE diet LD, and C diet psoas vs. LPE diet psoas); each pool comprised equal amounts of cDNAs from 6 individual pigs of 1 muscle type (LD or psoas) and 1 diet regimen (C or LPE diet). With the exception of 2 individuals, the same pigs were used for cDNA template generation and Cy-dye target labeling for microarray hybridization. A reference cDNA panel, comprising a number of different tissue templates (LD muscle, psoas, heart, uterus, brain, liver, and spleen) of a 7-wk-old pig, was used in tissue profiling.
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For the microarray analysis, a moderate set of filtering conditions on GeneSpring 6.0 (normalized ratio of at least 1.5 between diets, and 1-sample t test P-values not > 0.1) was used to estimate the total number of genes in each muscle affected by dietary changes. To identify individual genes that were expressed differentially between groups, relatively stringent filtering was performed (normalized ratio of at least 1.5 between diets, and 1-sample t test P-values not > 0.05) to find the top 5% of differences in expression.
Real-time RT-PCR data were analyzed by dividing each of the 3 replicate values for each gene by the mean value for ß-actin in that assay. Differences among ratios were tested in the general linear models (GLM) procedure of SAS with the model ratio = muscle x diet interaction. All models were statistically significant and the significance of differences between diets in the same muscle type was assessed by t tests with the lsmeans cl and pdiff options in the GLM procedure.
| RESULTS |
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Raised catabolic and anabolic potential in muscles from pigs fed the LPE diet. A list of more highly expressed genes, derived from stringent filtering conditions, common to both muscle types in pigs fed the LPE diet are summarized in Table 3. A few genes were identified more than once on the microarray. The LPE diet increased the expression of genes involved in the breakdown of glycogen (glycogen phosphorylase), fatty acids (e.g., phytanoyl-CoA hydroxylase), as well as proteins (e.g., ubiquitin E3 ligase) (Table 3). Elevated ATP generating potentials accompanied the catabolic trend toward increased substrate breakdown. Several key genes involved in glycolysis (e.g., ß-enolase), oxidative phosphorylation (e.g., cytochrome oxidases), and ATP synthesis (e.g., muscle creatine kinase) had higher expression levels (Table 3). The expression of genes involved in translation (ribosomal proteins), sarcomeric structure (e.g., MyHC 2a), and post-translational transport (vacuolar protein sorting) were also elevated (Table 3) in muscles of pigs fed the LPE diet, thereby providing evidence of increased translational capacity in parallel with raised potentials for substrate breakdown and ATP generation.
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Validation and extension of microarray findings.
To validate and extend the microarray findings, real-time quantitative RT-PCR was performed to determine the relative expression levels of a number of representative genes. Because intramuscular lipid concentration was greater in pigs fed the LPE diet, mRNA levels of 2 crucial lipid metabolism enzymes, phytanoyl-CoA hydroxylase (Table 3) and
-9 desaturase (stearoyl-CoA desaturase) (35,36), not reported on the present microarray, were quantified. Phytanoyl-CoA hydroxylase is an essential enzyme for the conversion of phytanoyl-CoA to 2-hydroxyphytanoyl-CoA in the oxidation of the BCFA, phytanic acid (37). In Refsum disease, the enzyme is deficient, leading to the accumulation of phytanic acid (37).
-9 Desaturase catalyzes the synthesis of important monounsaturated fatty acids from stearoyl-CoA and palmitoyl-CoA. Muscle creatine kinase, another gene involved in energy metabolism, responsible for the conversion of creatine to creatine phosphate (38), was also selected for real-time RT-PCR analysis. Expression of all 3 genes was elevated in both LD and psoas muscles of pigs fed the LPE diet (Fig. 1).
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P311 upregulated during muscle differentiation.
The functional role of P311 in skeletal muscle is unknown. Current data, although limited, suggest that it could have a wide range of effects on endocrine factors and their receptors, and on transcription factors of myogenesis (33,34). Because it was most highly expressed in skeletal muscle without preference to muscle type (Figs. 3Cand 4C), its relative expression during myogenic differentiation was examined in murine C2C12 muscle cells. In the presence of differentiation medium (DF) to induce myogenesis, as evidenced by increasing myotube formation and skeletal
-actin expression, there was a progressive rise in P311 expression (Fig. 5), suggesting a possible role for P311 in skeletal muscle differentiation/postdifferentiation phenotype determination.
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| DISCUSSION |
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Dietary restriction and intramuscular lipid accumulation. One of our main findings is that reduced dietary energy and protein in growing pigs significantly increased intramuscular fat. One possible explanation for this effect is that the low protein content restricted muscle growth, resulting in surplus energy being converted into intramuscular lipids. Previous work on growing pigs fed a carbohydrate-rich diet, in relation to protein, seems to support this suggestion (45). Another possible explanation is that restricted growth from the LPE diet led to fat redistribution, resulting in an increase in intramuscular fat (17). Our microarray results indicate that fatty acid oxidation was one of the main potential sources of fuel in muscle. However, subcutaneous fat was significantly higher in pigs fed the LPE diet (46). These observations seem to support the notion that in addition to raised oxidative potential, lipids were actively redistributed to and/or accumulated in certain tissues of pigs fed the LPE diet, including skeletal muscle. In obese humans, the accumulation of intramuscular (inter- and intrafiber) lipids is associated with insulin resistance and the subsequent development of type 2 diabetes mellitus (DM) (47). Obese individuals with type 2 DM have reduced rates of fatty acid oxidation, and reduced overall oxidative capacity in their muscles. In contrast, the accumulation of intramuscular lipids in porcine muscles after consumption of the LPE diet was accompanied by elevated glycolytic and oxidative potentials. Indeed, endurance-trained athletes have increased levels of intramuscular lipids (48,49). Hence, the accumulation of intramuscular lipids per se may not necessarily be detrimental.
Adult humans subjected to severe energy restriction for brief periods lost weight and had reduced lipid content in muscle fibers (8,42,50). It is not clear whether this is an age-dependent response to severe dietary restriction. Our study showed that a moderately restricted diet, sufficient to promote weight gain in young growing pigs (puberty starts at
21 wk of age), could elevate the levels of intramuscular lipids. This finding could have important implications for childhood dieting. For obese children, dietary restriction, contrary to expectation, could inadvertently raise intramuscular lipid, possibly contributing to the risk of type 2 DM development. Clearly, more work is required to examine the effects of dietary restriction on fatty acid metabolism in growing skeletal muscle.
In farm animal production, the ability to raise lipid content within muscle by reduced feeding could be a viable way to modify the quality of the meat products (44). In addition, the ability to upregulate
-9 desaturase is widely regarded as desirable to increase the relative levels of unsaturated fatty acids in meat (51). Our results show that dietary restriction increases the transcriptional rate of
-9 desaturase. Work is in progress to determine the enzymatic activity of
-9 desaturase and the levels of monosaturated fatty acids in muscle in energy-restricted animals.
Growth modulation and differentiation. The molecular mechanisms involved in growth modulation/differentiation during dietary restriction are not well documented. In this study, we identified a number of genes that appear to have growth modulatory properties, although their effects on muscle cells were not reported. This finding suggests that the cellular response to dietary restriction is an actively driven process. Some of these genes could play pivotal roles in growth suppression and muscle phenotype determination. One such candidate is cbl-b, a RING finger type ubiquitin E3 ligase, which functions as a downregulator of activated tyrosine kinasecoupled receptors that include insulin/IGF-1 receptor, and is a major susceptibility gene for rat type 1 DM (28). The dampening down of the insulin/IGF-1 axis during dietary restriction, via reduced circulating insulin and downregulation of insulin signaling by elevated cbl-b, could be a way of inducing increased insulin sensitivity during subsequent refeeding (52). Another gene, P311, was not only responsive to dietary restriction (Fig. 3C) but was most highly expressed in skeletal muscles (Fig. 4C), even though it was originally found in the brain and smooth muscle (33,34,53). Among a number of potential biological functions recently reported, P311 seems to play a crucial role in myofibroblast transformation of nonmuscle cells (33,34). Its progressive rise in expression during in vitro myogenic differentiation points to its possible importance in differentiation/postdifferentiation skeletal muscle phenotype determination.
In conclusion, we found that a moderately reduced energy and protein diet in growing pigs that led to reduced growth was accompanied by significantly increased intramuscular lipid, and increased potentials for substrate (protein, glycogen, and lipid) turnover, and mitochondrial function. A number of novel growth-regulatory genes were identified; one such gene, P311, was highly expressed in striated muscles and appeared to be involved in differentiation/postdifferentiation phenotype determination.
| FOOTNOTES |
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3 Abbreviations used: C, conventional diet; Cy-dye, cyanine dye; DE, digestible energy; DF, differentiation medium; DM, diabetes mellitus; ER, energy restriction; IGF-1, insulin-like growth factor 1; LD, longissimus dorsi; LPE, low protein and energy; MyHC, myosin heavy chain; P2, backfat thickness; TNF, tumor necrosis factor. ![]()
Manuscript received 6 January 2004. Initial review completed 9 February 2004. Revision accepted 27 May 2004.
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