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© 2002 The American Society for Nutritional Sciences J. Nutr. 132:2444S-2449S, 2002


Supplement: Trans-HHS Workshop: Diet, DNA Methylation Processes and Health

Impact of Folate Deficiency on DNA Stability1 ,2

Susan J. Duthie3, Sabrina Narayanan, Gillian M. Brand, Lynn Pirie and George Grant

Rowett Research Institute, Aberdeen, United Kingdom

3To whom correspondence should be addressed. E-mail: sd{at}rri.sari.ac.uk.


    ABSTRACT
 TOP
 ABSTRACT
 Folate and cancer
 Folate deficiency and mechanisms...
 DISCUSSION
 LITERATURE CITED
 
Convincing evidence links folate deficiency with colorectal cancer incidence. Currently, it is believed that folate deficiency affects DNA stability principally through two potential pathways. 5,10-Methylenetetrahydrofolate donates a methyl group to uracil, converting it to thymine, which is used for DNA synthesis and repair. If folate is limited, imbalances in the DNA precursor pool occur, and uracil may be misincorporated into DNA. Subsequent misincorporation and repair may lead to double strand breaks, chromosomal damage and cancer. Moreover, folate affects gene expression by regulating cellular S-adenosylmethionine (SAM) levels. 5-Methyltetrahydrofolate serves as methyl donor in the remethylation of homocysteine to methionine, which in turn is converted to SAM. SAM methylates specific cytosines in DNA, and this regulates gene transcription. As a consequence of folate deficiency, cellular SAM is depleted, which in turn induces DNA hypomethylation and potentially induces proto-oncogene expression leading to cancer. Data from several model systems supporting these mechanisms are reviewed here. There is convincing evidence that folate modulates both DNA synthesis and repair and DNA hypomethylation with altered gene expression in vitro. The data from in vivo experiments in rodents is more difficult to interpret because of variations in the animal and experimental systems used and the influence of tissue specificity and folate metabolism. Most importantly, the confounding effects of nutrient-gene interactions, together with the identification of polymorphisms in key enzyme systems and the influence that these have on folate metabolism and DNA stability, must be considered when interpreting evidence from human studies.


KEY WORDS: • folate • DNA stability • methylation • nutrition


    Folate and cancer
 TOP
 ABSTRACT
 Folate and cancer
 Folate deficiency and mechanisms...
 DISCUSSION
 LITERATURE CITED
 
Diet plays a crucial role in cancer development with inappropriate nutrition estimated to account for more than one third of cancer deaths (1Citation ,2Citation ). Although there is little real consensus as to the positive dietary risk factors for cancer (e.g., meat, fat and alcohol intake) in >80% of epidemiological case-control studies, consumption of fruits and vegetables is associated with a decreased risk (2Citation ). Folate is one of many compounds or components of fruits and vegetables that could be acting as a cytoprotective agent. Folate deficiency is common in developed countries and may affect a substantial percentage of the population, especially in low socioeconomic groups (3Citation ,4Citation ).

Folate deficiency has been implicated in the etiology of lung, cervical, breast and brain cancer. Convincing evidence links folate deficiency with colorectal cancer incidence. Colorectal cancer incidence is inversely associated with both dietary folate intake and blood cell folate concentrations (5Citation ). Moreover, the use of folate supplements has been reported to reduce cancer risk (6Citation ).


    Folate deficiency and mechanisms of DNA instability
 TOP
 ABSTRACT
 Folate and cancer
 Folate deficiency and mechanisms...
 DISCUSSION
 LITERATURE CITED
 
Currently, it is believed that folate deficiency affects DNA stability principally through two potential pathways (Fig. 1Citation ). The first is through altered DNA methylation. Folate, in the form of 5-methyltetrahydrofolate (5-methyl THF)4 , serves as methyl donor in the remethylation of homocysteine to methionine, which in turn is converted to S-adenosylmethionine (SAM).SAM methylates specific cytosines in DNA, and this regulates gene transcription. As a consequence of folate deficiency, cellular SAM is depleted, which in turn induces DNA hypomethylation and potentially induces proto-oncogene expression leading to cancer (7Citation ). The second pathway through which folate may alter DNA stability has received less attention. Folate, as 5,10 methylene THF, donates a methyl group to uracil converting it to thymine, which is used for DNA synthesis and repair. However, if folate is limiting, uracil misincorporation into DNA may occur. This in itself is mutagenic, but DNA instability also may occur via a different mechanism. As the cell attempts to repair itself, it breaks the DNA molecule to excise the uracil. If folate is continually limited, imbalances in deoxynucleotide triphosphates in the precursor pool occur. Uracil is misincorporated and repaired in what is termed "a catastrophic repair cycle," which may lead to double-strand breaks, chromosomal damage and cancer (8Citation ). Evidence from several in vitro and animal and human studies in vivo support the hypothesis that folates maintain DNA stability and prevent cancer. Selected areas will be reviewed here, with emphasis on work from our laboratory.



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FIGURE 1 Folate deficiency and DNA instability: potential mechanisms. 5, methyl THF, 5-methyltetrahydrofolate; 5,10 methylene THF, 5,10-methylenetetrahydrofolate; C, cytosine; G, guanine; THF, tetrahydrofolate; X denotes an inability to donate a methyl group (CH3). Reprinted from reference (42Citation ) by permission of The British Council.

 

    DISCUSSION
 TOP
 ABSTRACT
 Folate and cancer
 Folate deficiency and mechanisms...
 DISCUSSION
 LITERATURE CITED
 
In vitro model systems

Cell culture models provide a well defined, relatively simple and easily manipulated experimental system in which to investigate the ability of folate to modulate DNA stability and gene expression. DNA strand breakage, chromosomal aberrations (breaks, gaps and fragments) and apoptosis are induced in Chinese hamster ovary (CHO) cells cultured in folate-deficient media (9Citation –11Citation ). The cellular deoxyuridine monophosphate (dUTP):deoxythymidine triphosphate (dTTP) DNA precursor pool ratio is altered significantly in folate-deficient CHO cells, whereas spontaneous and chemically induced hypoxanthine-guanine phosphoribosyltransferase gene mutation frequency is increased (10Citation ,11Citation ). Uracil is increased in DNA from human lymphoid HL60 cells, normal human lymphocytes and repair-deficient CHO cells (CHO-UV5) grown in folate-deficient medium (12Citation ,13Citation ). Folate-deficient CHO-UV5 cells, subsequently repleted with vitamin B, undergo malignant transformation (13Citation ). Folate deficiency in vitro alters normal DNA replication, progressively inhibiting both normal human colonocyte and stimulated lymphocyte growth (14Citation ,15Citation ). More importantly, folate deficiency increases uracil misincorporation (measured using single-cell gel electrophoresis) two- to threefold in these cells (Fig. 2Citation ). This negative effect of folate deficiency on DNA stability is concentration dependent, with decreasing levels of folate both inhibiting cell proliferation and inducing uracil misincorporation progressively. DNA instability is induced at concentrations of folate (1–10 µ g/L) found in human plasma, suggesting that levels of folate that are adequate to prevent overt deficiency may not be optimal in maintaining DNA stability. Folate deficiency also impairs DNA repair processes, thus reducing the capacity of the cell to repair its DNA in response to oxidative or alkylation damage (15Citation ,16Citation ). Folate-deficient human colonocytes exposed to hydrogen peroxide or methyl methanesulfonate, an alkylating agent, are unable to repair DNA strand breakage as efficiently as folate-sufficient cells (Fig. 3Citation ). Initial damage is similar for both groups, only subsequent nucleotide excision repair is negatively affected. This inefficient repair of oxidative and alkylation damage is meaningful considering that folate-deficient diets probably also are poor in antioxidants and other micronutrients that protect against oxidative and alkylation damage.



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FIGURE 2 Effect of folate deficiency on uracil misincorporation in human colon epithelial cells. Colonocytes were grown in the presence ({square}) or absence ({blacksquare}) of folic acid (4 mg/L) for up to 14 d. Values are mean ± SEM; n > 8, * P < 0.05 vs. absence of folic acid. SEM, standard error of the mean. Reprinted from reference (15Citation ) by permission of the publisher, Lawrence Erlbaum Associates.

 


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FIGURE 3 Effect of folate depletion on colonocyte repair capacity. Human colonocytes were grown in the presence ({square}) or absence (•) of folic acid (4 mg/L) for 14 d. DNA strand breakage was measured immediately (0 h) or 4, 8 and 24 h after exposure to H2O2 (A) or methyl methanesulfonate (B). Values are mean ± SEM; n > 8, *P < 0.05 vs. presence of folic acid. Values are mean ± SEM. UT, untreated. Reprinted from reference (15Citation ) by permission of the publisher, Lawrence Erlbaum Associates.

 
Folate status modulates DNA methylation in vitro. We have reported that folate deficiency in human lymphocytes and colon cells induces DNA hypomethylation (15Citation ). It remains to be established whether gene expression or even malignant transformation is altered in these model systems.

Animal models

Does folate deficiency in vivo have the same effects as in cultured cells? Obviously, the model systems employed here are more complex, and the conclusions that can be drawn from the literature are less clear.

Red blood cell micronuclei levels are increased in mice made folate deficient over a period of several weeks (17Citation ). Methyl donor deficiency in rats increases the hepatic ratio of dUTP to dTTP threefold, induces DNA strand breakage in hepatic p53 and in genomic DNA from splenic lymphocytes and liver and upregulates apoptosis (18Citation –20Citation ). Uracil misincorporation is increased in the liver of methyl-deficient or combined hepatectomized and methotrexate-treated rats (21Citation ). In a recent experiment in our laboratory (22Citation ), rats were fed a control diet (group A) or a diet deficient in folate alone (group B) or deficient in the methyl donors choline and methionine (group C). Animals in group D were deficient in all three compounds. Feeding the rats a folate-free diet for 10 wk caused a 50% decrease in plasma folate and an ~25% decrease both in red blood cell and liver folate, both regarded as folate stores. DNA strand breakage was increased progressively from 0 to 4 to 8 wks in rats fed any of the experimental diets. The greatest effect was observed in the combined deficiency group indicating that, at least for DNA strand breaks, the effect of methyl donor deficiency may be relatively nonspecific (22Citation ). This is in direct contrast with the effect of methyl donor deficiency on uracil misincorporation, where only the rats made folate deficient (groups B and D) showed a progressive increase in lymphocyte uracil concentrations (Fig. 4Citation ). Strangely, the increase in uracil misincorporation in the combined deficiency group lagged behind the purely folate-deficient group. Possibly the combined deficiency was so severe in this group that apoptosis was induced in the lymphocytes. Circulating lymphocyte numbers were halved in this group compared with controls (193 ± 5.5 x 104/mL in folate-deficient rats compared with 288 ± 14.3 x 104/mL in control animals). In the same study, methyl deficiency in general increased DNA strand breakage in rat colonocytes isolated by enzyme digestion. Conversely, uracil misincorporation in colonocytes was not altered by either folate or methyl donor deficiency (Fig. 5Citation ). Why this should be the case remains to be established. Endogenous levels of uracil DNA glycosylase are highest in actively proliferating cells (23Citation ), raising questions of differential repair and tissue susceptibility and, most importantly, of whether lymphocytes really can be used as a surrogate for target tissues in biomonitoring.



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FIGURE 4 Effect of methyl donor deficiency on uracil misincorporation in rat lymphocytes. Rats were fed a control diet (group A), a diet deficient in folic acid (group B), choline and methionine (group C) or a diet deficient in all three methyl donors (group D) for up to 10 wk. Results are means ± SEM (n = 8). *P < 0.0002, where significance refers to differences in uracil levels between rats fed a control diet (group A) for 4 wk and rats fed either a diet deficient in folic acid (group B) or a diet deficient in folic acid, choline and methionine (group D). +P < 0.01, where significance refers to differences in uracil levels between rats fed a diet deficient in folic acid (group B) for 4 or 8 wk or a diet deficient in folic acid, choline and methionine for 4 or 8 wk (group D). Folate-, folate deficient; chol/meth-, choline and methionine deficient; folate/chol/meth-, folate, choline and methionine deficient. Values are mean ± SEM. Reprinted from reference (22Citation ) by permission of the publisher, Churchill Livingstone.

 


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FIGURE 5 Effect of methyl donor deficiency on DNA strand breakage (A) and misincorporated uracil (B) in isolated colonocytes of rats. Rats were fed a control diet (group A), a diet deficient in folic acid (group B), choline and methionine (group C) or a diet deficient in all three methyl donors (group D) for up to 10 wk. DNA strand breakage or uracil misincorporation was measured in rat isolated colonocytes. Folate-, folate deficient; chol/meth-, choline and methionine deficient; folate/chol/meth-, folate, choline and methionine deficient. Results are mean ± SEM (n = 8). *P < 0.01, where significance refers to differences between group A and groups B–D after receiving the diet for 10 wk. Reprinted from reference (28Citation ) by permission of the publisher, Steinkopff Verlag.

 
The effect of folate/methyl deficiency on global DNA methylation is dependent on the rat model and the treatment regimen used. For example, diets that are severely deficient in folic acid or lacking methionine and/or choline decrease SAM, alter the SAM:S-adenosylhomocysteine ratio and induce DNA hypomethylation and mRNA proto-oncogene expression in rat liver (24Citation ,25Citation ). Conversely, a moderate folate deficiency either produces no effect on global DNA methylation (liver or colon) or only very specific changes in particular proto-oncogenes (26Citation ,27Citation ). We have found that colonocyte global DNA methylation status is unaffected by folate and/or methyl deficiency (28Citation ). This was the same for liver and lymphocyte DNA.

Studies with human subjects

The crucial question, however, is, "Can folate alter DNA stability in humans?" Certain studies have reported that blood cell micronuclei levels are elevated in subjects with low blood folate and vitamin B-12 levels (29Citation ) but can be reduced following supplementation with folic acid (29Citation ,30Citation ). However, in subjects with normal blood levels, micronuclei frequency appears to be unrelated to folate status (31Citation ). Small but detectable levels of uracil are found in leukocyte DNA from subjects with normal plasma and erythrocyte folate levels (14Citation ,30Citation ), whereas uracil misincorporation is elevated in patients with megaloblastic anemia (32Citation ) and in folate-deficient individuals (30Citation ). As in rats, the effect of folate on DNA methylation in humans is unclear. Jacob et al. (33Citation ) reported that dietary folate depletion caused global DNA methylation in lymphocytes isolated from postmenopausal women. This was reversible upon folate repletion (33Citation ). Conversely, there was no significant association between blood folate and DNA methylation status prior to or following supplementation with folic acid in other human studies (31Citation ,34Citation ). The scenario becomes even more complex when the influence of human genetic polymorphisms in folate-metabolizing enzymes is taken into consideration. 5,10-Methylenetetrahydrofolate is converted to 5-methyltetrahydrofolate by the enzyme methylenetetrahydrofolate reductase (MTHFR; EC 1.5.1.20). This enzyme is polymorphic with ~ 10–15% of the population homozygous for a mutation termed C677T (a cytosine-to-thymine transition at position 677), which decreases the efficiency of the enzyme (35Citation ). The extent to which uracil misincorporation and/or DNA methylation influence colorectal cancer risk may be established by investigating DNA stability in individuals with these various polymorphisms. It might be expected that, for homozygous variants with reduced enzyme activity, 5-methyltetrahydrofolate and SAM levels would be decreased and DNA hypomethylation would increase cancer risk. Alternatively, the homozygous mutation might cause accumulation of 5,10-methylenetetrahydrofolate, which would drive the reaction toward thymidine synthesis. This would suggest a decreased risk of colorectal cancer in this group (Fig. 6Citation ). Individuals homozygous for the C677T mutation appear to be at reduced risk of colorectal cancer compared with homozygous wild-type or heterozygote individuals (35Citation ), suggesting that chemoprotection occurs via decreased uracil misincorporation into DNA. Surprisingly, uracil misincorporation into human lymphocyte DNA following folate depletion (at least in vitro) is similar for all genotypes (36Citation ). Moreover, mice deficient in MTHFR (homozygous variants and heterozygotes) exhibit tissue-specific decreased methylation capacity (37Citation ), whereas peripheral leukocytes from human subjects homozygous for the C677T polymorphism have a significantly higher methyl group acceptance capacity compared with homozygous wild types (38Citation ).



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FIGURE 6 The hypothesized effect of having the homozygous C667T MTHFR genotype on DNA stability and colorectal cancer risk. X denotes an inability to donate a methyl group (CH3). MTHFR, methylenetetrahydrofolate reductase; SAH, S-adenosylmethionine; SAM, S-adenosylhomocysteine.

 
Currently, two potential mechanisms appear to explain the DNA-destabilizing effects of folate deficiency and the associated increase in cancer risk, namely, uracil misincorporation and chromosomal instability or DNA hypomethylation and altered gene expression. The impact of each of these potential mechanisms is dependent on different forms of folate, either 5,10-methylenetetrahydrofolate or 5-methyltetrahydrofolate and possibly the balance between these forms. There is strong evidence that both of these pathways work in vitro. However, the evidence from in vivo animal studies, where the models are more complex and may be influenced by tissue specificity and folate metabolism combined with variations in the animal and experimental models used, becomes more difficult to interpret. In human studies, the confounding effects of nutrient-gene interactions, together with the identification of polymorphisms in key enzyme systems and the influence that these have on folate metabolism and DNA stability, must be considered.

Moreover, there may be other ways, in addition to the two mechanisms described here, through which folate may prevent human cancers. Recent studies suggest that several folates can act directly as strong antiproliferative agents inhibiting gastric mucosal cell hyperproliferation and malignant transformation (39Citation ,40Citation ). Tyrosine kinase activity, epidermal growth factor receptor expression and colon cancer cell growth are all inhibited in vitro following exposure to specific folates (39Citation ,40Citation ). Also, folate has antioxidant properties, scavenging several reactive oxygen species in vitro and inhibiting lipid peroxidation in rat microsomes (41Citation ). Thus, folate could modulate heart disease by inhibiting low density lipoprotein oxidation in humans. Could folate similarly protect the genome by inhibiting free radical attack against DNA oxidative damage, for example by reducing 8-hydroxydeoxyguanosine levels and decreasing mutagenesis? Certainly in the experimental systems that we have used this does not appear to be the case. Oxidized pyrimidine levels were unaffected in human lymphocytes made folate deficient in vitro (14Citation ). Similarly, in the rat model described earlier, folate deficiency did not alter the extent of either oxidized purines or pyrimidines (22Citation ).


    ACKNOWLEDGMENTS
 
The human colonocyte cell line was a gift from Elizabeth Offord, Nestle, Lausanne, Switzerland.


    FOOTNOTES
 
1 Presented at the "Trans-HHS Workshop: Diet, DNA Methylation Processes and Health" held on August 6–8, 2001, in Bethesda, MD. This meeting was sponsored by the National Center for Toxicological Research, Food and Drug Administration; Center for Cancer Research, National Cancer Institute; Division of Cancer Prevention, National Cancer Institute; National Heart, Lung and Blood Institute; National Institute of Child Health and Human Development; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Environmental Health Sciences; Division of Nutrition Research Coordination, National Institutes of Health; Office of Dietary Supplements, National Institutes of Health; American Society for Nutritional Sciences; and the International Life Sciences Institute of North America. Workshop proceedings are published as a supplement to The Journal of Nutrition. Guest editors for the supplement were Lionel A. Poirier, National Center for Toxicological Research, Food and Drug Administration, Jefferson, AR, and Sharon A. Ross, Nutritional Science Research Group, Division of Cancer Prevention, National Cancer Institute, Bethesda, MD. Back

2 This work was supported by to the Scottish Executive Environment and Rural Affairs Department and the World Cancer Research Fund. Back

4 Abbreviations used: C677T, cytosine-to-thymine transition at position 677; CHO cells, Chinese hamster ovary cells; CHO-UV5, repair deficient CHO cells; dTTP; deoxythymidine triphosphate; dUMP, deoxyuridine monophosphate; MTHFR, methylene+tetrahydrofolate reductase; 5,10-methylene THF, 5,10-methylenetetrahydrofolate; SAM, S-adenosylmethionine. Back


    LITERATURE CITED
 TOP
 ABSTRACT
 Folate and cancer
 Folate deficiency and mechanisms...
 DISCUSSION
 LITERATURE CITED
 

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